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Bioinformatics with Python Cookbook. Solve advanced computational biology problems and build production pipelines with Python and AI tools - Fourth Edition Shane Brubaker, Tiago Antao

Język publikacji: angielski
Bioinformatics with Python Cookbook. Solve advanced computational biology problems and build production pipelines with Python and AI tools - Fourth Edition Shane Brubaker, Tiago Antao - okladka książki

Bioinformatics with Python Cookbook. Solve advanced computational biology problems and build production pipelines with Python and AI tools - Fourth Edition Shane Brubaker, Tiago Antao - okladka książki

Autorzy:
Shane Brubaker, Tiago Antao
Serie wydawnicze:
Cookbook
Ocena:
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If you've ever felt overwhelmed by the vast number of Python tools available for bioinformatics, you're not alone. The Bioinformatics with Python Cookbook is a recipe-based guide that explores practical approaches for solving classic bioinformatics challenges, showing you which Python packages work best for each task.
You’ll start with the essential Python libraries for data science and bioinformatics, then move through key workflows in sequencing analysis, quality control, alignment, and variant calling. Along the way, you’ll pick up modern coding practices, explore recent advances in bioinformatics research, and gain hands-on experience with libraries such as NumPy, pandas, and sci-kit learn. This book walks you through core bioinformatics tasks such as phylogenetic analysis and population genomics while familiarizing you with the wealth of modern public bioinformatics databases. You’ll learn cloud computing approaches used by researchers, set up workflow orchestration systems for controlling bioinformatics pipelines, and see how AI and the use of large language models (LLMs) are reshaping the field–right down to designing proteins and DNA.
By the end of this book, you’ll be ready to apply Python for real bioinformatics work and launch bioinformatics pipelines for your research.

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O autorach książki

Shane Brubaker is a Senior Bioinformatics Manager and researcher at Myriad Genetics, where he contributes to advancing genetic testing and cancer research through cutting-edge sequencing technologies.

He holds a B.S. in Computer Science from Purdue University and an M.S. in Biology from the University of Oregon.

With extensive experience in synthetic biology and human health, Shane has leveraged bioinformatics to drive scientific innovation, develop new products, and advocate for impactful solutions in both human and environmental health.
Tiago Antao is a bioinformatician currently working in the field of genomics. A former computer scientist, Tiago moved into computational biology with an MSc in Bioinformatics from the Faculty of Sciences at the University of Porto (Portugal) and a PhD on the spread of drug-resistant malaria from the Liverpool School of Tropical Medicine (UK). Postdoctoral, Tiago has worked with human datasets at the University of Cambridge (UK) and with mosquito whole genome sequencing data at the University of Oxford (UK), before helping to set up the bioinformatics infrastructure at the University of Montana. He currently works as a data engineer in the biotechnology field in Boston, MA. He is one of the co-authors of Biopython, a major bioinformatics package written in Python.

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